This file contains the 2.6 release of the University of Victoria Earth System Climate Model (UVic_ESCM). Individual files may be accessed through the main UVic_ESCM link. Compressed, the file is approximately 10.3 Mb. After expansion files will be placed in a UVic_ESCM directory. This version of the model requires "perl" to use the "mk" script which automatically "makes" and runs the model. The model also requires linking to a netcdf library as most of the I/O is now in netcdf without the option of unformatted I/O. To set up the model for the first time: 1) Set your PATH environment variable to include the UVic_ESCM directory. For example: "set path = ($path /usr/local/models/UVic_ESCM)" if you are in a csh or a tcsh and you have the UVic_ESCM directory in /usr/local/models. Although not absolutely necessary this will do two things. It will allow you to have access to the mk script, which is in UVic_ESCM, and it will allow mk to find the version directory you want without having to specify the full path. You may then need to re"source" your system variables for your system to find mk. For example: "source ~/.cshrc" if you are in a csh or a tcsh. 2) Find where perl is located on your machine. The command "which perl" may locate it. It is often located in /usr/bin or /usr/local/bin. If you can not locate it, you will need to install it on your system. Almost all systems have perl. Try http://www.perl.com for downloading perl. If perl is located somewhere other than /usr/local/bin, you can edit the first line of the mk file (which is in UVic_ESCM) to point to the right location (recommended if all systems have it in the same location) or set up a link to perl in /usr/local/bin (dangerous if you do it incorrectly). 3) The model also requires some form of preprocessing. This is usually done by the c preprocessor cpp but the model can be set up to use the preprocessing of many fortan compilers. If you want to use cpp, you will need to make sure it is installed on your system. Most systems have cpp but you may need to set the location or options in your UVic_ESCM/2.6/run/mk.ver file later (see step 6 below). 4) The mk script will also make use of a few system variables. You may want to check if $HOME, $HOST or $HOSTNAME and $OSTYPE are defined. The script will work without these settings but you may find it more limited. 5) Look for the netcdf library file "libnetcdf.a". Try looking looking in /usr/lib/. If netcdf is not installed on your system you will need to get a copy of libnetcdf.a for your system or compile one from source code. Try http://www.unidata.ucar.edu/packages/netcdf to download netcdf source code or binaries. Once you have located the libnetcdf.a file, either copy it to UVic_ESCM/2.6/lib or create a link to it in UVic_ESCM/2.6/lib. If you are using a file system that is shared by many different machines, you may want to create directories of libraries for different machine types. For example "UVic_ESCM/2.6/lib/lib_aix" and "UVic_ESCM/2.6/lib/lib_linux". 6) Edit the file "UVic_ESCM/2.6/run/mk.ver" to set the default options for your system. There are many settings that are recognised by mk. It may help to type "mk h" and read the resulting log file to understand what can be set in "mk.in" or "mk.ver" files. If you have a system other than aix or linux (or a different compiler), you can do the following: type "echo $OSTYPE" or "echo $HOST", copy and/or edit an existing section of definitions (eg. aix or linux) making sure you change the identifier (eg. aix or linux) to your own $OSTYPE or $HOST. If you use $OSTYPE all machines that use the operating system will use the definitions but if you use $HOST or $HOSTNAME only that specific machine will use the definitions. Any settings that are in the mk.ver file may also be set in your local mk.in file or a mk.in file in your home directory. The priority is: local mk.in, your home mk.in and then the mk.ver file. 7) If you wish to run jobs from a queue, you can look at the example run files and modify a copy of one for your system. The linux example does not actually queue a job but it does allow the model to be run in job steps. Run files can also be set up to be operating system or machine dependent. To recreate the main example directory: 1) Create and change to a model directory (eg. my_example) 2) Type "mk r 2.6" "2.6" should either include the full path to 2.6 or you should add the directory which holds 2.6 to your PATH variable. The "2.6" portion is only needed once. Once a mk.in file is created in your example directory you can rerun mk without having to specify the model version directory. This should make and run the model on the local machine with output as in the directory UVic_ESCM/2.6/example For mk options just type "mk" and for more help try "mk h". A very quick description of available uvic options: Note: not all options or combinations of options are well tested! # general options uvic_global_sums = diagnostic for heat and fresh water in coupled components uvic_min_window = use minimum memory window uvic_sbc_in_memory = boundary conditions kept in memory uvic_io_multiple_files = models and time slices to separate files uvic_io_single = unformatted I/O written in single precision uvic_io_single_file = multiple run output to a single file uvic_read_kmt_map = reads ascii map of kmt rather than netcdf file uvic_save_flxadj = writes flux adjustment if coupled and using restorst uvic_replacst = replaces ocean surface tracers with data # embm options uvic_embm = main embm option uvic_embm_even_fluxes = every other flux used for conservative coupling uvic_embm_running_average = write annual average sat uvic_embm_adv_q = advect moisture uvic_embm_no_mountains = no mountains uvic_embm_no_rivers = river runoff distributed evenly along coast # embm forcing options uvic_embm_co2_exp = exponentially increasing co2 uvic_embm_co2_lin = linearly increasing co2 uvic_embm_berger_transient = changing orbital parameters uvic_embm_annual = annual mean solar forcing uvic_embm_astress = wind stress feedback # embm solver options uvic_embm_2d_diff = use 2d array for diffusion coefficients uvic_embm_adi = adi atmospheric solver uvic_embm_slap = slap atmospheric solver uvic_embm_essl = essl atmospheric solver uvic_embm_mgrid = mgrid atmospheric solver uvic_embm_explicit = explicit atmospheric solver uvic_embm_explicit_q = explicit solver just for q uvic_embm_difadv_t = advection and diffusion of t uvic_embm_solve2x = half resolution solver in x uvic_embm_solve2y = half resolution solver in y # embm land options uvic_embm_land = land surface model uvic_embm_landice = land ice data (not functional in this release) uvic_embm_snow_transient = no limit on snow accumulation # ice options uvic_ice = main ice option uvic_ice_evp = evp dynamics uvic_ice_cpts = main cpts model option uvic_ice_cpts1 = 1 category uvic_ice_cpts3 = 3 categories uvic_ice_cpts5 = 5 categories uvic_ice_cpts10 = 10 categories uvic_ice_cpts_roth_press = uses roth pressure uvic_ice_cpts_simple_growth = not sure uvic_ice_cpts_warnings = gives warnings # mom options uvic_mom = main mom option uvic_tbt = netcdf tracer term balances uvic_convect_brine = convect separately under ice categories uvic_save_convection = save some convection diagnostics uvic_read_my_stf = read surface fluxes for ocean # ice sheet option ubc_cidm = ubc ice sheet dynamic model (not functional in this release) # 2.5 compatibility options uvic_old_albedo = surface albedo set to 1 uvic_old_rest = reads old unformated restarts writes old and new uvic_old_ws = calculates wind speed from wind stress uvic_old_adv_q = uses extra diffusion for t with advection of q # obsolete or not very useful options uvic_regional_overturning uvic_regional_overturning_timavgper uvic_no_statfunc uvic_ice_albh There are also a few new variables that can be set in the namelist file: In diagn: tsiper = period over which time step integrals are averaged in time In io: uvic_mk = true/false to write all mk variables to the printout file mrot = region for tsi max/min overturning streamfunction (only used to limit i) isot1 = first starting index in i for overturning (not used if mrot > 0) ieot1 = first ending index in i for overturning (not used if mrot > 0) isot2 = second starting index in i for overturning (not used if mrot > 0) ieot2 = second ending index in i for overturning (not used if mrot > 0) jsot = starting index in j for tsi max/min overturning streamfunction jeot = ending index in j for tsi max/min overturning streamfunction ksot = starting index in k for tsi max/min overturning streamfunction keot = ending index in k for tsi max/min overturning streamfunction In co2: co2ccn = co2 concentration (initial if varying) co2yri = year of change from initial value co2yrf = final year of change co2rate = rate of increase (ppm/year for linear or %/100/year for exponential) co2for = radiative forcing factor In ice: dampice = relaxation time for sst to approach freezing under sea ice To get the overturning in the North Atlantic (rather than the global values) for the example model configuration you could add: mrot=1, jsot=65, jeot=90, ksot=3, keot=17 to the "io" namelist section of the control.in file. If you would like a yearly average of max/min overturning (and all other tsi variables), set tsiper to 365 (tsiint must also be set >= tsiper). To uncompress the files: gunzip UVic_ESCM.2.6.tar.gz tar -xvf UVic_ESCM.2.6.tar File list: UVic_ESCM/ UVic_ESCM/mk UVic_ESCM/2.6/ UVic_ESCM/2.6/lib/ UVic_ESCM/2.6/lib/lib_aix/ UVic_ESCM/2.6/lib/lib_aix/libnetcdf.a UVic_ESCM/2.6/lib/lib_linux/ UVic_ESCM/2.6/lib/lib_linux/libnetcdf.a UVic_ESCM/2.6/run/ UVic_ESCM/2.6/run/mk.in UVic_ESCM/2.6/run/run_aix UVic_ESCM/2.6/run/run_linux UVic_ESCM/2.6/run/mk.ver UVic_ESCM/2.6/run/control.in UVic_ESCM/2.6/run/run_minerva.UVic.CA UVic_ESCM/2.6/data/ UVic_ESCM/2.6/data/ann/ UVic_ESCM/2.6/data/ann/wa_ann.nc UVic_ESCM/2.6/data/ann/kmt.map UVic_ESCM/2.6/data/ann/elev.nc UVic_ESCM/2.6/data/ann/region_masks UVic_ESCM/2.6/data/ann/sst_ann.nc UVic_ESCM/2.6/data/ann/wy_ann.nc UVic_ESCM/2.6/data/ann/tauy_ann.nc UVic_ESCM/2.6/data/ann/kmt.nc UVic_ESCM/2.6/data/ann/grid.nc UVic_ESCM/2.6/data/ann/rivers.map UVic_ESCM/2.6/data/ann/w_surf/ UVic_ESCM/2.6/data/ann/w_surf/wx_surf_ann.nc UVic_ESCM/2.6/data/ann/w_surf/wy_surf_ann.nc UVic_ESCM/2.6/data/ann/sf_alb.nc UVic_ESCM/2.6/data/ann/sss_ann.nc UVic_ESCM/2.6/data/ann/wx_ann.nc UVic_ESCM/2.6/data/ann/ws_ann.nc UVic_ESCM/2.6/data/ann/taux_ann.nc UVic_ESCM/2.6/data/mth/ UVic_ESCM/2.6/data/mth/wx_mth.nc UVic_ESCM/2.6/data/mth/ws_mth.nc UVic_ESCM/2.6/data/mth/taux_mth.nc UVic_ESCM/2.6/data/mth/kmt.map UVic_ESCM/2.6/data/mth/wa_mth.nc UVic_ESCM/2.6/data/mth/elev.nc UVic_ESCM/2.6/data/mth/region_masks UVic_ESCM/2.6/data/mth/kmt.nc UVic_ESCM/2.6/data/mth/sst_mth.nc UVic_ESCM/2.6/data/mth/grid.nc UVic_ESCM/2.6/data/mth/wy_mth.nc UVic_ESCM/2.6/data/mth/rivers.map UVic_ESCM/2.6/data/mth/w_surf/ UVic_ESCM/2.6/data/mth/w_surf/wy_surf_mth.nc UVic_ESCM/2.6/data/mth/w_surf/wx_surf_mth.nc UVic_ESCM/2.6/data/mth/tauy_mth.nc UVic_ESCM/2.6/data/mth/sf_alb.nc UVic_ESCM/2.6/data/mth/sss_mth.nc UVic_ESCM/2.6/data/mth_rot/ UVic_ESCM/2.6/data/mth_rot/wx_mth.nc UVic_ESCM/2.6/data/mth_rot/ws_mth.nc UVic_ESCM/2.6/data/mth_rot/taux_mth.nc UVic_ESCM/2.6/data/mth_rot/kmt.map UVic_ESCM/2.6/data/mth_rot/wa_mth.nc UVic_ESCM/2.6/data/mth_rot/elev.nc UVic_ESCM/2.6/data/mth_rot/kmt.nc UVic_ESCM/2.6/data/mth_rot/sst_mth.nc UVic_ESCM/2.6/data/mth_rot/grid.nc UVic_ESCM/2.6/data/mth_rot/wy_mth.nc UVic_ESCM/2.6/data/mth_rot/w_surf/ UVic_ESCM/2.6/data/mth_rot/w_surf/wy_surf_mth.nc UVic_ESCM/2.6/data/mth_rot/w_surf/wx_surf_mth.nc UVic_ESCM/2.6/data/mth_rot/tauy_mth.nc UVic_ESCM/2.6/data/mth_rot/sf_alb.nc UVic_ESCM/2.6/data/mth_rot/sss_mth.nc UVic_ESCM/2.6/data/ann_rot/ UVic_ESCM/2.6/data/ann_rot/wa_ann.nc UVic_ESCM/2.6/data/ann_rot/kmt.map UVic_ESCM/2.6/data/ann_rot/elev.nc UVic_ESCM/2.6/data/ann_rot/sst_ann.nc UVic_ESCM/2.6/data/ann_rot/wy_ann.nc UVic_ESCM/2.6/data/ann_rot/tauy_ann.nc UVic_ESCM/2.6/data/ann_rot/kmt.nc UVic_ESCM/2.6/data/ann_rot/grid.nc UVic_ESCM/2.6/data/ann_rot/w_surf/ UVic_ESCM/2.6/data/ann_rot/w_surf/wx_surf_ann.nc UVic_ESCM/2.6/data/ann_rot/w_surf/wy_surf_ann.nc UVic_ESCM/2.6/data/ann_rot/sf_alb.nc UVic_ESCM/2.6/data/ann_rot/sss_ann.nc UVic_ESCM/2.6/data/ann_rot/wx_ann.nc UVic_ESCM/2.6/data/ann_rot/ws_ann.nc UVic_ESCM/2.6/data/ann_rot/taux_ann.nc UVic_ESCM/2.6/README UVic_ESCM/2.6/updates/ UVic_ESCM/2.6/source/ UVic_ESCM/2.6/source/ice/ UVic_ESCM/2.6/source/ice/evp.F UVic_ESCM/2.6/source/ice/evp.h UVic_ESCM/2.6/source/ice/ice.F UVic_ESCM/2.6/source/ice/ice.h UVic_ESCM/2.6/source/ice/iceadv.F UVic_ESCM/2.6/source/ice/therm.F UVic_ESCM/2.6/source/ice/cpts.F UVic_ESCM/2.6/source/ice/cpts.h UVic_ESCM/2.6/source/ice/thermo.h UVic_ESCM/2.6/source/mom/ UVic_ESCM/2.6/source/mom/ptraj.F UVic_ESCM/2.6/source/mom/ptraj.h UVic_ESCM/2.6/source/mom/mw.h UVic_ESCM/2.6/source/mom/cobc2.F UVic_ESCM/2.6/source/mom/invtri.F UVic_ESCM/2.6/source/mom/relax1.F UVic_ESCM/2.6/source/mom/delsq.F UVic_ESCM/2.6/source/mom/tcslab.h UVic_ESCM/2.6/source/mom/addobcpsi.F UVic_ESCM/2.6/source/mom/diaga.h UVic_ESCM/2.6/source/mom/diagi.F UVic_ESCM/2.6/source/mom/diago.F UVic_ESCM/2.6/source/mom/ctavg.h UVic_ESCM/2.6/source/mom/csnap.h UVic_ESCM/2.6/source/mom/mom.F 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